Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
LAML rs11594940 chr10:78948669 A/C 0.000118 111 14.22 15.73 0 KM Plot
LAML rs11595437 chr10:78982431 C/G 0.000118 111 14.22 15.73 0 KM Plot
LAML rs115980554 chr6:34456632 C/T 0.000156 106 16.3 9.12 0 KM Plot
LAML rs11601056 chr11:93229161 C/T 3.2E-5 107 16.3 12.2 6.13 KM Plot
LAML rs11601296 chr11:58423297 A/G 1.98E-5 110 20.27 11.13 4.58 KM Plot
LAML rs11604909 chr11:93218355 C/G 4.6E-5 111 6.13 12.2 16.3 KM Plot
LAML rs11607827 chr11:119731345 T/G 0.000139 109 15.7 12.68 0 KM Plot
LAML rs11621007 chr14:90743967 G/A 1.22E-5 109 12.7 21.87 1.03 KM Plot
LAML rs11626016 chr14:90747979 C/T 9.99E-6 109 12.7 21.32 1.03 KM Plot
LAML rs11626933 chr14:90754311 A/G 1.32E-5 108 13.2 21.87 1.03 KM Plot
LAML rs116314571 chr5:25941695 C/T 0.000145 111 15.17 16.17 0 KM Plot
LAML rs116330132 chr5:25949919 A/G 0.000145 111 15.17 16.17 0 KM Plot
LAML rs11649 chr4:2251211 G/C 8.98E-5 110 17.23 7.13 20.75 KM Plot
LAML rs116502307 chr5:25948963 T/A 0.000145 111 15.17 16.17 0 KM Plot
LAML rs11653393 chr17:168032 T/C 7.11E-6 111 15.17 23.37 3.07 KM Plot